Fixing documentation linking.

4 files changed, 47 insertions, 47 deletions

diff --git a/docs/user_guide/gaze_analysis/gaze_movement.md b/docs/user_guide/gaze_analysis/gaze_movement.md
index e022be0..83f67e1 100644
--- a/docs/user_guide/gaze_analysis/gaze_movement.md
+++ b/docs/user_guide/gaze_analysis/gaze_movement.md
@@ -9,26 +9,26 @@ Gaze movement
 
         Citation from ["One algorithm to rule them all? An evaluation and discussion of ten eye movement event-detection algorithms"](https://link.springer.com/article/10.3758/s13428-016-0738-9) article.
 
-[GazeFeatures](../../../argaze/#argaze.GazeFeatures) defines abstract [GazeMovement](../../../argaze/#argaze.GazeFeatures.GazeMovement) class, then abstract [Fixation](../../../argaze/#argaze.GazeFeatures.Fixation) and [Saccade](../../../argaze/#argaze.GazeFeatures.Saccade) classes which inherit from [GazeMovement](../../../argaze/#argaze.GazeFeatures.GazeMovement).
+[GazeFeatures](../../argaze.md/#argaze.GazeFeatures) defines abstract [GazeMovement](../../argaze.md/#argaze.GazeFeatures.GazeMovement) class, then abstract [Fixation](../../argaze.md/#argaze.GazeFeatures.Fixation) and [Saccade](../../argaze.md/#argaze.GazeFeatures.Saccade) classes which inherit from [GazeMovement](../../argaze.md/#argaze.GazeFeatures.GazeMovement).
 
-The **positions** [GazeMovement](../../../argaze/#argaze.GazeFeatures.GazeMovement) attribute contain all [GazePositions](../../../argaze/#argaze.GazeFeatures.GazePosition) belonging to itself.
+The **positions** [GazeMovement](../../argaze.md/#argaze.GazeFeatures.GazeMovement) attribute contain all [GazePositions](../../argaze.md/#argaze.GazeFeatures.GazePosition) belonging to itself.
 
 ![Fixation and Saccade](../../img/fixation_and_saccade.png)
 
 ## Identification
 
-[GazeFeatures](../../../argaze/#argaze.GazeFeatures) defines abstract [GazeMovementIdentifier](../../../argaze/#argaze.GazeFeatures.GazeMovementIdentifier) classe to let add various identification algorithms.
+[GazeFeatures](../../argaze.md/#argaze.GazeFeatures) defines abstract [GazeMovementIdentifier](../../argaze.md/#argaze.GazeFeatures.GazeMovementIdentifier) classe to let add various identification algorithms.
 
-Some gaze movement identification algorithms are available thanks to [GazeAnalysis](../../../argaze/#argaze.GazeAnalysis) submodule:
+Some gaze movement identification algorithms are available thanks to [GazeAnalysis](../../argaze.md/#argaze.GazeAnalysis) submodule:
 
-* [Dispersion threshold identification (I-DT)](../../../argaze/#argaze.GazeAnalysis.DispersionThresholdIdentification)
-* [Velocity threshold identification (I-VT)](../../../argaze/#argaze.GazeAnalysis.VelocityThresholdIdentification)
+* [Dispersion threshold identification (I-DT)](../../argaze.md/#argaze.GazeAnalysis.DispersionThresholdIdentification)
+* [Velocity threshold identification (I-VT)](../../argaze.md/#argaze.GazeAnalysis.VelocityThresholdIdentification)
 
 ### Identify method
 
-[GazeMovementIdentifier.identify](../../../argaze/#argaze.GazeFeatures.GazeMovementIdentifier.identify) method allows to fed its identification algorithm with successive gaze positions to output Fixation, Saccade or any kind of GazeMovement instances.
+[GazeMovementIdentifier.identify](../../argaze.md/#argaze.GazeFeatures.GazeMovementIdentifier.identify) method allows to fed its identification algorithm with successive gaze positions to output Fixation, Saccade or any kind of GazeMovement instances.
 
-Here is a sample of code based on [I-DT](../../../argaze/#argaze.GazeAnalysis.DispersionThresholdIdentification) algorithm to illustrate how to use it:
+Here is a sample of code based on [I-DT](../../argaze.md/#argaze.GazeAnalysis.DispersionThresholdIdentification) algorithm to illustrate how to use it:
 
 ``` python
 from argaze import GazeFeatures
@@ -81,13 +81,13 @@ gaze_movement_identifier = DispersionThresholdIdentification.GazeMovementIdentif
 
 ### Browse method
 
-[GazeMovementIdentifier.browse](../../../argaze/#argaze.GazeFeatures.GazeMovementIdentifier.browse) method allows to pass a [TimeStampedGazePositions](../../../argaze/#argaze.GazeFeatures.TimeStampedGazePositions) buffer to apply identification algorithm on all gaze positions inside.
+[GazeMovementIdentifier.browse](../../argaze.md/#argaze.GazeFeatures.GazeMovementIdentifier.browse) method allows to pass a [TimeStampedGazePositions](../../argaze.md/#argaze.GazeFeatures.TimeStampedGazePositions) buffer to apply identification algorithm on all gaze positions inside.
 
 Identified gaze movements are returned through:
 
-* [TimeStampedGazeMovements](../../../argaze/#argaze.GazeFeatures.TimeStampedGazeMovements) instance where all fixations are stored by starting gaze position timestamp.
-* [TimeStampedGazeMovements](../../../argaze/#argaze.GazeFeatures.TimeStampedGazeMovements) instance where all saccades are stored by starting gaze position timestamp.
-* [TimeStampedGazeStatus](../../../argaze/#argaze.GazeFeatures.TimeStampedGazeStatus) instance where all gaze positions are linked to a fixation or saccade index.
+* [TimeStampedGazeMovements](../../argaze.md/#argaze.GazeFeatures.TimeStampedGazeMovements) instance where all fixations are stored by starting gaze position timestamp.
+* [TimeStampedGazeMovements](../../argaze.md/#argaze.GazeFeatures.TimeStampedGazeMovements) instance where all saccades are stored by starting gaze position timestamp.
+* [TimeStampedGazeStatus](../../argaze.md/#argaze.GazeFeatures.TimeStampedGazeStatus) instance where all gaze positions are linked to a fixation or saccade index.
 
 ``` python
 # Assuming that timestamped gaze positions are provided through data reading
@@ -136,13 +136,13 @@ ts_fixations, ts_saccades, ts_status = gaze_movement_identifier.browse(ts_gaze_p
 
 
 !!! note
-        [TimeStampedGazeMovements](../../../argaze/#argaze.GazeFeatures.TimeStampedGazeMovements), [TimeStampedGazeMovements](../../../argaze/#argaze.GazeFeatures.TimeStampedGazeMovements) and [TimeStampedGazeStatus](../../../argaze/#argaze.GazeFeatures.TimeStampedGazeStatus) classes inherit from [TimeStampedBuffer](../../../argaze/#argaze.DataStructures.TimeStampedBuffer) class. 
+        [TimeStampedGazeMovements](../../argaze.md/#argaze.GazeFeatures.TimeStampedGazeMovements), [TimeStampedGazeMovements](../../argaze.md/#argaze.GazeFeatures.TimeStampedGazeMovements) and [TimeStampedGazeStatus](../../argaze.md/#argaze.GazeFeatures.TimeStampedGazeStatus) classes inherit from [TimeStampedBuffer](../../argaze.md/#argaze.DataStructures.TimeStampedBuffer) class. 
 
         Read [Timestamped data](../timestamped_data/introduction.md) section to understand all features it provides.
 
 ### Generator method
 
-[GazeMovementIdentifier](../../../argaze/#argaze.GazeFeatures.GazeMovementIdentifier) can be called with a [TimeStampedGazePositions](../../../argaze/#argaze.GazeFeatures.TimeStampedGazePositions) buffer in argument to generate gaze movement each time one is identified.
+[GazeMovementIdentifier](../../argaze.md/#argaze.GazeFeatures.GazeMovementIdentifier) can be called with a [TimeStampedGazePositions](../../argaze.md/#argaze.GazeFeatures.TimeStampedGazePositions) buffer in argument to generate gaze movement each time one is identified.
 
 ``` python
 # Assuming that timestamped gaze positions are provided through data reading
diff --git a/docs/user_guide/gaze_analysis/gaze_position.md b/docs/user_guide/gaze_analysis/gaze_position.md
index 8dce2b8..48495b4 100644
--- a/docs/user_guide/gaze_analysis/gaze_position.md
+++ b/docs/user_guide/gaze_analysis/gaze_position.md
@@ -1,7 +1,7 @@
 Gaze position
 =============
 
-[GazeFeatures](../../../argaze/#argaze.GazeFeatures) defines a [GazePosition](../../../argaze/#argaze.GazeFeatures.GazePosition) class to handle point coordinates with a precision value.
+[GazeFeatures](../../argaze.md/#argaze.GazeFeatures) defines a [GazePosition](../../argaze.md/#argaze.GazeFeatures.GazePosition) class to handle point coordinates with a precision value.
 
 ``` python
 from argaze import GazeFeatures
@@ -20,7 +20,7 @@ print(f'precision: {gaze_position.precision}')
 
 ## Validity
 
-[GazeFeatures](../../../argaze/#argaze.GazeFeatures) defines also a [UnvalidGazePosition](../../../argaze/#argaze.GazeFeatures.UnvalidGazePosition) class that inherits from [GazePosition](../../../argaze/#argaze.GazeFeatures.GazePosition) to handle case where no gaze position exists because of any specific device reason.
+[GazeFeatures](../../argaze.md/#argaze.GazeFeatures) defines also a [UnvalidGazePosition](../../argaze.md/#argaze.GazeFeatures.UnvalidGazePosition) class that inherits from [GazePosition](../../argaze.md/#argaze.GazeFeatures.GazePosition) to handle case where no gaze position exists because of any specific device reason.
 
 ``` python
 from argaze import GazeFeatures
@@ -38,7 +38,7 @@ print(f'validity: {gaze_position.valid}')
 
 ## Distance
 
-[GazePosition](../../../argaze/#argaze.GazeFeatures.GazePosition) class provides a **distance** method to calculate the distance to another gaze position instance.
+[GazePosition](../../argaze.md/#argaze.GazeFeatures.GazePosition) class provides a **distance** method to calculate the distance to another gaze position instance.
 
 ![Distance](../../img/distance.png)
 
@@ -49,7 +49,7 @@ d = gaze_position_A.distance(gaze_position_B)
 
 ## Overlapping
 
-[GazePosition](../../../argaze/#argaze.GazeFeatures.GazePosition) class provides an **overlap** method to test if a gaze position overlaps another one considering their precisions.
+[GazePosition](../../argaze.md/#argaze.GazeFeatures.GazePosition) class provides an **overlap** method to test if a gaze position overlaps another one considering their precisions.
 
 ![Gaze overlapping](../../img/overlapping.png)
 
@@ -69,7 +69,7 @@ if gaze_position_A.overlap(gaze_position_B, both=True):
 
 ## Timestamped gaze positions
 
-[TimeStampedGazePositions](../../../argaze/#argaze.GazeFeatures.TimeStampedGazePositions) inherits from [TimeStampedBuffer](../../../argaze/#argaze.DataStructures.TimeStampedBuffer) class to handle especially gaze positions.
+[TimeStampedGazePositions](../../argaze.md/#argaze.GazeFeatures.TimeStampedGazePositions) inherits from [TimeStampedBuffer](../../argaze.md/#argaze.DataStructures.TimeStampedBuffer) class to handle especially gaze positions.
 
 ### Import from dataframe
 
@@ -87,7 +87,7 @@ ts_gaze_positions = GazeFeatures.TimeStampedGazePositions.from_dataframe(datafra
 ```
 ### Iterator
 
-Like [TimeStampedBuffer](../../../argaze/#argaze.DataStructures.TimeStampedBuffer), [TimeStampedGazePositions](../../../argaze/#argaze.GazeFeatures.TimeStampedGazePositions) class provides iterator feature:
+Like [TimeStampedBuffer](../../argaze.md/#argaze.DataStructures.TimeStampedBuffer), [TimeStampedGazePositions](../../argaze.md/#argaze.GazeFeatures.TimeStampedGazePositions) class provides iterator feature:
 
 ```python
 for timestamp, gaze_position in ts_gaze_positions.items():
diff --git a/docs/user_guide/gaze_analysis/introduction.md b/docs/user_guide/gaze_analysis/introduction.md
index c888181..bf818ba 100644
--- a/docs/user_guide/gaze_analysis/introduction.md
+++ b/docs/user_guide/gaze_analysis/introduction.md
@@ -3,5 +3,5 @@ Gaze analysis
 
 This section refers to:
 
-* [GazeFeatures](../../../argaze/#argaze.GazeFeatures)
-* [GazeAnalysis](../../../argaze/#argaze.GazeAnalysis)
\ No newline at end of file
+* [GazeFeatures](../../argaze.md/#argaze.GazeFeatures)
+* [GazeAnalysis](../../argaze.md/#argaze.GazeAnalysis)
\ No newline at end of file
diff --git a/docs/user_guide/gaze_analysis/scan_path.md b/docs/user_guide/gaze_analysis/scan_path.md
index fba0524..46af28b 100644
--- a/docs/user_guide/gaze_analysis/scan_path.md
+++ b/docs/user_guide/gaze_analysis/scan_path.md
@@ -1,27 +1,27 @@
 Scan path
 =========
 
-[GazeFeatures](../../../argaze/#argaze.GazeFeatures) defines classes to handle successive fixations/saccades and analyse their spatial or temporal properties.
+[GazeFeatures](../../argaze.md/#argaze.GazeFeatures) defines classes to handle successive fixations/saccades and analyse their spatial or temporal properties.
 
 ## Fixation based scan path
 
 ### Definition
 
-The [ScanPath](../../../argaze/#argaze.GazeFeatures.ScanPath) class is defined as a list of [ScanSteps](../../../argaze/#argaze.GazeFeatures.ScanStep) which are defined as a fixation and a consecutive saccade.
+The [ScanPath](../../argaze.md/#argaze.GazeFeatures.ScanPath) class is defined as a list of [ScanSteps](../../argaze.md/#argaze.GazeFeatures.ScanStep) which are defined as a fixation and a consecutive saccade.
 
 ![Fixation based scan path](../../img/scan_path.png)
 
-As fixations and saccades are identified, the scan path is built by calling respectively [append_fixation](../../../argaze/#argaze.GazeFeatures.ScanPath.append_fixation) and [append_saccade](../../../argaze/#argaze.GazeFeatures.ScanPath.append_saccade) methods.
+As fixations and saccades are identified, the scan path is built by calling respectively [append_fixation](../../argaze.md/#argaze.GazeFeatures.ScanPath.append_fixation) and [append_saccade](../../argaze.md/#argaze.GazeFeatures.ScanPath.append_saccade) methods.
 
 ### Analysis
 
-[GazeFeatures](../../../argaze/#argaze.GazeFeatures) defines abstract [ScanPathAnalyzer](../../../argaze/#argaze.GazeFeatures.ScanPathAnalyzer) classe to let add various analysis algorithms.
+[GazeFeatures](../../argaze.md/#argaze.GazeFeatures) defines abstract [ScanPathAnalyzer](../../argaze.md/#argaze.GazeFeatures.ScanPathAnalyzer) classe to let add various analysis algorithms.
 
-Some scan path analysis are available thanks to [GazeAnalysis](../../../argaze/#argaze.GazeAnalysis) submodule:
+Some scan path analysis are available thanks to [GazeAnalysis](../../argaze.md/#argaze.GazeAnalysis) submodule:
 
-* [K-Coefficient](../../../argaze/#argaze.GazeAnalysis.KCoefficient)
-* [Nearest Neighbor Index](../../../argaze/#argaze.GazeAnalysis.NearestNeighborIndex)
-* [Exploit Explore Ratio](../../../argaze/#argaze.GazeAnalysis.ExploitExploreRatio)
+* [K-Coefficient](../../argaze.md/#argaze.GazeAnalysis.KCoefficient)
+* [Nearest Neighbor Index](../../argaze.md/#argaze.GazeAnalysis.NearestNeighborIndex)
+* [Exploit Explore Ratio](../../argaze.md/#argaze.GazeAnalysis.ExploitExploreRatio)
 
 ### Example
 
@@ -65,23 +65,23 @@ kc_analyzer = KCoefficient.ScanPathAnalyzer()
 
 ### Definition
 
-The [AOIScanPath](../../../argaze/#argaze.GazeFeatures.AOIScanPath) class is defined as a list of [AOIScanSteps](../../../argaze/#argaze.GazeFeatures.AOIScanStep) which are defined as set of consecutives fixations looking at a same Area Of Interest (AOI) and a consecutive saccade.
+The [AOIScanPath](../../argaze.md/#argaze.GazeFeatures.AOIScanPath) class is defined as a list of [AOIScanSteps](../../argaze.md/#argaze.GazeFeatures.AOIScanStep) which are defined as set of consecutives fixations looking at a same Area Of Interest (AOI) and a consecutive saccade.
 
 ![AOI based scan path](../../img/aoi_scan_path.png)
 
-As fixations and saccades are identified, the scan path is built by calling respectively [append_fixation](../../../argaze/#argaze.GazeFeatures.AOIScanPath.append_fixation) and [append_saccade](../../../argaze/#argaze.GazeFeatures.AOIScanPath.append_saccade) methods.
+As fixations and saccades are identified, the scan path is built by calling respectively [append_fixation](../../argaze.md/#argaze.GazeFeatures.AOIScanPath.append_fixation) and [append_saccade](../../argaze.md/#argaze.GazeFeatures.AOIScanPath.append_saccade) methods.
 
 ### Analysis
 
-[GazeFeatures](../../../argaze/#argaze.GazeFeatures) defines abstract [AOIScanPathAnalyzer](../../../argaze/#argaze.GazeFeatures.AOIScanPathAnalyzer) classe to let add various analysis algorithms.
+[GazeFeatures](../../argaze.md/#argaze.GazeFeatures) defines abstract [AOIScanPathAnalyzer](../../argaze.md/#argaze.GazeFeatures.AOIScanPathAnalyzer) classe to let add various analysis algorithms.
 
-Some scan path analysis are available thanks to [GazeAnalysis](../../../argaze/#argaze.GazeAnalysis) submodule:
+Some scan path analysis are available thanks to [GazeAnalysis](../../argaze.md/#argaze.GazeAnalysis) submodule:
 
-* [Transition matrix](../../../argaze/#argaze.GazeAnalysis.TransitionMatrix)
-* [Entropy](../../../argaze/#argaze.GazeAnalysis.Entropy)
-* [Lempel-Ziv complexity](../../../argaze/#argaze.GazeAnalysis.LempelZivComplexity)
-* [N-Gram](../../../argaze/#argaze.GazeAnalysis.NGram)
-* [K-modified coefficient](../../../argaze/#argaze.GazeAnalysis.KCoefficient)
+* [Transition matrix](../../argaze.md/#argaze.GazeAnalysis.TransitionMatrix)
+* [Entropy](../../argaze.md/#argaze.GazeAnalysis.Entropy)
+* [Lempel-Ziv complexity](../../argaze.md/#argaze.GazeAnalysis.LempelZivComplexity)
+* [N-Gram](../../argaze.md/#argaze.GazeAnalysis.NGram)
+* [K-modified coefficient](../../argaze.md/#argaze.GazeAnalysis.KCoefficient)
 
 ### Example
 
@@ -130,13 +130,13 @@ lzc_analyzer = LempelZivComplexity.AOIScanPathAnalyzer()
 
 ### Advanced
 
-The [AOIScanPath](../../../argaze/#argaze.GazeFeatures.AOIScanPath) class provides some advanced features to analyse it.
+The [AOIScanPath](../../argaze.md/#argaze.GazeFeatures.AOIScanPath) class provides some advanced features to analyse it.
 
 #### Letter sequence
 
-When a new [AOIScanStep](../../../argaze/#argaze.GazeFeatures.AOIScanStep) is created, the [AOIScanPath](../../../argaze/#argaze.GazeFeatures.AOIScanPath) internally affects a unique letter index related to its AOI to ease pattern analysis.
-Then, the [AOIScanPath letter_sequence](../../../argaze/#argaze.GazeFeatures.AOIScanPath.letter_sequence) property returns the concatenation of each [AOIScanStep](../../../argaze/#argaze.GazeFeatures.AOIScanStep) letter.
-The [AOIScanPath get_letter_aoi](../../../argaze/#argaze.GazeFeatures.AOIScanPath.get_letter_aoi) method helps to get back the AOI related to a letter index.
+When a new [AOIScanStep](../../argaze.md/#argaze.GazeFeatures.AOIScanStep) is created, the [AOIScanPath](../../argaze.md/#argaze.GazeFeatures.AOIScanPath) internally affects a unique letter index related to its AOI to ease pattern analysis.
+Then, the [AOIScanPath letter_sequence](../../argaze.md/#argaze.GazeFeatures.AOIScanPath.letter_sequence) property returns the concatenation of each [AOIScanStep](../../argaze.md/#argaze.GazeFeatures.AOIScanStep) letter.
+The [AOIScanPath get_letter_aoi](../../argaze.md/#argaze.GazeFeatures.AOIScanPath.get_letter_aoi) method helps to get back the AOI related to a letter index.
 
 ``` python
 # Assuming the following AOI scan path is built: Foo > Bar > Shu > Foo
@@ -152,10 +152,10 @@ print(aoi_scan_path.get_letter_aoi('B'))
 
 #### Transition matrix
 
-When a new [AOIScanStep](../../../argaze/#argaze.GazeFeatures.AOIScanStep) is created, the [AOIScanPath](../../../argaze/#argaze.GazeFeatures.AOIScanPath) internally counts the number of transitions from an AOI to another AOI to ease Markov chain analysis.
-Then, the [AOIScanPath transition_matrix](../../../argaze/#argaze.GazeFeatures.AOIScanPath.transition_matrix) property returns a [Pandas DataFrame](https://pandas.pydata.org/docs/reference/api/pandas.DataFrame.html) where indexes are transition departures and columns are transition destinations.
+When a new [AOIScanStep](../../argaze.md/#argaze.GazeFeatures.AOIScanStep) is created, the [AOIScanPath](../../argaze.md/#argaze.GazeFeatures.AOIScanPath) internally counts the number of transitions from an AOI to another AOI to ease Markov chain analysis.
+Then, the [AOIScanPath transition_matrix](../../argaze.md/#argaze.GazeFeatures.AOIScanPath.transition_matrix) property returns a [Pandas DataFrame](https://pandas.pydata.org/docs/reference/api/pandas.DataFrame.html) where indexes are transition departures and columns are transition destinations.
 
-Here is an exemple of transition matrix for the following [AOIScanPath](../../../argaze/#argaze.GazeFeatures.AOIScanPath): Foo > Bar > Shu > Foo > Bar
+Here is an exemple of transition matrix for the following [AOIScanPath](../../argaze.md/#argaze.GazeFeatures.AOIScanPath): Foo > Bar > Shu > Foo > Bar
 
 |   |Foo|Bar|Shu|
 |:--|:--|:--|:--|
@@ -166,4 +166,4 @@ Here is an exemple of transition matrix for the following [AOIScanPath](../../..
 
 #### Fixations count
 
-The [AOIScanPath fixations_count](../../../argaze/#argaze.GazeFeatures.AOIScanPath.fixations_count) method returns the total number of fixations in the whole scan path and a dictionary to get the fixations count per AOI.
+The [AOIScanPath fixations_count](../../argaze.md/#argaze.GazeFeatures.AOIScanPath.fixations_count) method returns the total number of fixations in the whole scan path and a dictionary to get the fixations count per AOI.