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#! /bin/bash
#
# Load json ArGaze context file ($1) then, look for all Tobii record segments into input folder ($2).
#
# For each Tobii record segment found:
# - context "segment" field is modified to bind on it,
# - context "pipeline" field is modified to bind on a temporary patched pipeline \
# resulting from the merging of the given pipeline and an optionnal "patch.json" file in Tobii record segment,
# - then, ArGaze executes the modified context from output folder ($3) to export all records into it,
# - finally, context is resetted and temporary patched pipeline is removed.
#
# Arguments:
# $1: ArGaze context file
# $2: folder from where to look for Tobii records
# $3: folder where to export processing outputs
#######################################
# Check required arguments
if [ "$#" -ne 3 ]; then
echo "!!! Incorrect number of arguments"
exit 1
fi
context_file=$1
input_folder=$2
output_folder=$3
# Check requirements:
if brew ls --versions jq > /dev/null; then
: # jq installed
else
echo "*** Installing jq package"
brew install jq
fi
# Check context
ctx_folder="$(dirname "$context_file")"
ctx_class=$(jq "keys[0]" $context_file)
ctx_name=$(jq .$ctx_class.name $context_file)
ctx_segment=$(jq .$ctx_class.segment $context_file)
pipeline_file=$(jq -r .$ctx_class.pipeline $context_file)
echo "*** Loading $ctx_class context:"
echo "- Name: $ctx_name"
# Move to context folder
cd $ctx_folder
# Check pipeline
if [ -f "$pipeline_file" ]; then
ppl_class=$(jq "keys[0]" $pipeline_file)
ppl_name=$(jq .$ppl_class.name $pipeline_file)
echo "- Pipeline: $ppl_name"
else
echo "!!! Missing $pipeline_file pipeline file"
exit 1
fi
#######################################
# Process Tobii segment folder
# Arguments:
# $1: Path to Tobii segment
#######################################
function process_segment() {
local rec_id=$1
local seg_folder=$2
local seg_id=$(basename $seg_folder)
local seg_length=$(jq .seg_length $seg_folder/segment.json)
local ca_state=$(jq -r .ca_state $seg_folder/calibration.json)
echo "- Segment $seg_id:"
echo " - Lenght: $seg_length"
echo " - Calibration: $ca_state"
# Check patch
patch_file="$seg_folder/patch.json"
if [ -f "$patch_file" ]; then
echo "+ Patch:"
echo "$(jq . $patch_file)"
# Edit temporary patched pipeline
temp_file=".$rec_id-$seg_id.patch.json"
echo "$(jq --tab -s ".[0] * .[1]" $pipeline_file $patch_file)" > "$ctx_folder/$temp_file"
# Modify context pipeline
echo "$(jq --tab ".$ctx_class.pipeline = \"$temp_file\"" $context_file)" > $context_file
echo "*** $ctx_folder/$temp_file file created"
fi
# Modify context segment
echo "$(jq --tab ".$ctx_class.segment = \"$seg_folder\"" $context_file)" > $context_file
# Create segment output folder then, move into
seg_output=$output_folder/$rec_id/segments/$seg_id
mkdir -p $seg_output
cd $seg_output
# Launch modified context with argaze load command
echo "*** ArGaze starts context"
python -m argaze load $context_file
echo "*** ArGaze ends context"
# Move back to context folder
cd $ctx_folder
# Reset context segment
echo "$(jq --tab ".$ctx_class.segment = $ctx_segment" $context_file)" > $context_file
# Check temporary pipeline
if [ -f "$temp_file" ]; then
# Delete temporary patched pipeline
rm "$ctx_folder/$temp_file"
# Reset context pipeline
echo "$(jq --tab ".$ctx_class.pipeline = \"$pipeline_file\"" $context_file)" > $context_file
echo "*** $ctx_folder/$temp_file file removed"
fi
}
#######################################
# Process Tobii record folder
# Arguments:
# $1: Path to Tobii record
#######################################
function process_record() {
local rec_folder=$1
local rec_id=$(basename $rec_folder)
local rec_name=$(jq .rec_info.Name $rec_folder/recording.json)
local pa_id=$(jq .pa_id $rec_folder/participant.json)
local pa_name=$(jq .pa_info.Name $rec_folder/participant.json)
echo "*** Loading record $rec_id:"
echo "- Name: $rec_name"
echo "- Participant:"
echo " - Id: $pa_id"
echo " - Name: $pa_name"
for segment in $rec_folder/segments/*; do
process_segment $rec_id "$rec_folder/segments/$(basename $segment)"
done
}
echo "*** Looking for Tobii records into $2 folder"
# Check if the path is directly a path to a record segment
if [ -f "$input_folder/livedata.json.gz" ]; then
process_record "$(dirname "$(dirname "$input_folder")")"
# Otherwise, look for all Tobii record segment
else
for tobii_data in $input_folder/**/segments/*/livedata.json.gz; do
process_record "$(dirname "$(dirname "$(dirname "$tobii_data")")")"
done
fi
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